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8U01

Crystal Structure of the Glycoside Hydrolase Family 2 TIM Barrel-domain Containing Protein from Phocaeicola plebeius

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2016-11-09
DetectorDECTRIS PILATUS3 X 6M
Wavelength(s)0.9792
Spacegroup nameP 41 3 2
Unit cell lengths230.110, 230.110, 230.110
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution69.380 - 3.000
R-factor0.1551
Rwork0.153
R-free0.18610
Structure solution methodSAD
RMSD bond length0.003
RMSD bond angle0.565
Data reduction softwarexia2
Data scaling softwarexia2
Phasing softwareHKL-3000
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]72.8003.050
High resolution limit [Å]3.0003.000
Rmerge0.1370.524
Rmeas0.1390.534
Rpim0.0270.105
Number of reflections421072039
<I/σ(I)>28.97.5
Completeness [%]100.099.1
Redundancy267.5
CC(1/2)0.9990.974
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.52980.2 M sodium chloride, 0.1 M HEPES, pH 7.5, 30% v/v PEG400

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