8TQD
NF-Kappa-B1 Bound with a Covalent Inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL45XU |
Synchrotron site | SPring-8 |
Beamline | BL45XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-06-22 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.00000 |
Spacegroup name | P 31 |
Unit cell lengths | 57.210, 57.210, 71.850 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.550 - 2.020 |
R-factor | 0.1837 |
Rwork | 0.182 |
R-free | 0.22665 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 1.165 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0415) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.550 | 2.070 |
High resolution limit [Å] | 2.020 | 2.020 |
Rmerge | 0.075 | 1.060 |
Rmeas | 0.079 | 1.116 |
Rpim | 0.024 | 0.346 |
Total number of observations | 182077 | 13161 |
Number of reflections | 17269 | 1278 |
<I/σ(I)> | 17.1 | 2.3 |
Completeness [%] | 100.0 | |
Redundancy | 10.5 | 10.3 |
CC(1/2) | 0.999 | 0.679 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 293 | 0.1 M Citrate pH5.0, 20%w/v PEG 6000 |