8TE3
Crystal structure of the methyltransferase domain of R882C/R676K DNMT3A homotetramer
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.3 |
Synchrotron site | ALS |
Beamline | 5.0.3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2021-10-21 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97648 |
Spacegroup name | P 3 |
Unit cell lengths | 177.298, 177.298, 110.736 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 46.960 - 3.200 |
R-factor | 0.2083 |
Rwork | 0.207 |
R-free | 0.24130 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5yx2 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.310 |
High resolution limit [Å] | 3.200 | 6.890 | 3.200 |
Rmerge | 0.292 | 0.066 | 1.285 |
Rmeas | 0.334 | 0.076 | 1.471 |
Rpim | 0.161 | 0.036 | 0.712 |
Total number of observations | 273938 | ||
Number of reflections | 64344 | 6448 | 6431 |
<I/σ(I)> | 2.5 | ||
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 4.3 | 4.3 | 4.2 |
CC(1/2) | 0.997 | 0.317 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 0.2-0.4 M potassium sodium tartrate |