8SVN
Crystal structure of the apo form of pregnane X receptor ligand binding domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-10-06 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 83.990, 89.653, 106.873 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 53.440 - 2.200 |
R-factor | 0.2141 |
Rwork | 0.210 |
R-free | 0.23540 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.003 |
RMSD bond angle | 0.570 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX (1.20.1_4487) |
Refinement software | PHENIX ((1.20.1_4487)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 89.650 | 2.270 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.099 | 1.546 |
Rmeas | 0.103 | 1.603 |
Rpim | 0.028 | 0.424 |
Total number of observations | 50090 | |
Number of reflections | 41701 | 3574 |
<I/σ(I)> | 13.6 | 1.9 |
Completeness [%] | 100.0 | |
Redundancy | 13.5 | 14 |
CC(1/2) | 0.998 | 0.753 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 277 | in 0.1 M HEPES pH 7.0, and 14% Isopropanol |