8STS
Crystal Structure of HIV-1 Reverse Transcriptase (Y181C, V106A) varient in Complex with 5-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)-4-fluorophenoxy)-7-fluoro-2-naphthonitrile (JLJ636), a non-nucleoside inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-08-09 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.920105 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 89.860, 128.260, 133.042 |
Unit cell angles | 90.00, 105.32, 90.00 |
Refinement procedure
Resolution | 38.110 - 3.020 |
R-factor | 0.2422 |
Rwork | 0.240 |
R-free | 0.28520 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1eet |
RMSD bond length | 0.001 |
RMSD bond angle | 0.381 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 128.312 | 3.072 |
High resolution limit [Å] | 3.020 | 3.020 |
Rmerge | 0.121 | 2.914 |
Rmeas | 0.130 | 3.134 |
Rpim | 0.049 | 1.150 |
Number of reflections | 56957 | 2810 |
<I/σ(I)> | 10.3 | 0.8 |
Completeness [%] | 99.6 | |
Redundancy | 7.1 | |
CC(1/2) | 0.998 | 0.375 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 277 | 50 mM HEPES pH 7.0, 20% PEG 8000, 100 mM ammonium sulfate, 15 mM magnesium sulfate, and 5 mM spermine |