8ST7
Structure of E3 ligase VsHECT bound to ubiquitin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-12-12 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.979460 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 35.855, 157.276, 53.025 |
Unit cell angles | 90.00, 93.76, 90.00 |
Refinement procedure
Resolution | 37.240 - 1.440 |
R-factor | 0.1714 |
Rwork | 0.170 |
R-free | 0.19850 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.012 |
RMSD bond angle | 1.257 |
Data reduction software | XDS |
Data scaling software | Aimless (CCP4-7.1.015) |
Phasing software | PHASER (CCP4-7.1.015) |
Refinement software | PHENIX (1.19.1_4122) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.320 | 1.460 |
High resolution limit [Å] | 1.440 | 1.440 |
Rmerge | 0.036 | 0.597 |
Number of reflections | 91269 | 2146 |
<I/σ(I)> | 17.7 | 1.9 |
Completeness [%] | 86.7 | |
Redundancy | 3.9 | 3.5 |
CC(1/2) | 0.998 | 0.709 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 20% PEG 2K MME, 0.1 M MES pH 6.0, and 20% ethylene glycol |