8S8W
SARS-CoV-2 nsp10-16 methyltransferase in complex with Sangivamycin and m7GpppA-RNA (Cap0-RNA)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, DESY BEAMLINE P11 |
Synchrotron site | PETRA III, DESY |
Beamline | P11 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-12-07 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 1.033220 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 167.140, 167.140, 51.830 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.800 - 2.100 |
R-factor | 0.1878 |
Rwork | 0.187 |
R-free | 0.22370 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.213 |
Data reduction software | XDS (1.20.1_4487) |
Data scaling software | XDS (1.20.1_4487) |
Phasing software | PHENIX (1.21_5207) |
Refinement software | PHENIX (1.21_5207) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.800 | 2.190 |
High resolution limit [Å] | 2.099 | 2.100 |
Rmerge | 0.253 | 3.550 |
Rmeas | 0.264 | 3.708 |
Rpim | 0.076 | 1.064 |
Number of reflections | 94499 | 11830 |
<I/σ(I)> | 6.88 | 0.45 |
Completeness [%] | 99.8 | 99.75 |
Redundancy | 11.9 | 11.9 |
CC(1/2) | 0.996 | 0.227 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293.15 | 400 mM sodium fluoride, 100 mM 2-(N-morpholino)ethanesulfonic acid |