Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8S63

Low pH (5.5) as-isolated MSOX movie series dataset 3 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [1.71 MGy]

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2022-07-18
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.855
Spacegroup nameP 63
Unit cell lengths103.990, 103.990, 64.570
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution52.049 - 1.170
Rwork0.118
R-free0.14210
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.011
RMSD bond angle1.855
Data reduction softwarexia2
Data scaling softwareAimless
Phasing softwareREFMAC
Refinement softwareREFMAC (5.8.0425)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]52.4801.190
High resolution limit [Å]1.1701.170
Rmerge0.0571.698
Rmeas0.0712.092
Rpim0.0401.191
Number of reflections1323066482
<I/σ(I)>9.2
Completeness [%]99.1
Redundancy4.33.8
CC(1/2)0.9980.327
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.529350 mM Hepes pH 5.5, 1.8 M Ammonium Sulphate

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon