8RMX
Transglutaminase 3 in complex with DH patient-derived Fab DH63-A02
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-02-16 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9762 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 93.031, 264.004, 148.700 |
Unit cell angles | 90.00, 106.29, 90.00 |
Refinement procedure
Resolution | 132.000 - 2.803 |
Rwork | 0.205 |
R-free | 0.25030 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.012 |
RMSD bond angle | 1.152 |
Data reduction software | DIALS |
Data scaling software | Aimless (0.7.13) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0430 (refmacat 0.4.88)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 132.002 | 132.000 | 2.860 |
High resolution limit [Å] | 2.800 | 14.570 | 2.800 |
Rmerge | 0.176 | 0.051 | 2.831 |
Rmeas | 0.207 | 0.060 | 3.336 |
Rpim | 0.108 | 0.032 | 1.747 |
Number of reflections | 83425 | 623 | 4064 |
<I/σ(I)> | 5.1 | ||
Completeness [%] | 99.3 | ||
Redundancy | 7.1 | 6.3 | 7.1 |
CC(1/2) | 0.994 | 0.987 | 0.395 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 295 | 0.15 M phosphate-citrate pH 5.0, 40% ethanol and 5% PEG 400 |