8RD5
Crystal structure of Kemp Eliminase HG3.R5 with bound transition state analog 6-nitrobenzotriazole
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-06-02 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 1 |
Unit cell lengths | 44.414, 50.069, 65.584 |
Unit cell angles | 100.72, 102.70, 99.30 |
Refinement procedure
Resolution | 43.202 - 1.500 |
Rwork | 0.103 |
R-free | 0.14230 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.667 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0419) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.080 | 48.080 | 1.530 |
High resolution limit [Å] | 1.500 | 8.220 | 1.500 |
Rmerge | 0.056 | 0.051 | 0.180 |
Rmeas | 0.079 | 0.072 | 0.255 |
Rpim | 0.056 | 0.051 | 0.180 |
Number of reflections | 81699 | 513 | 3878 |
<I/σ(I)> | 12.7 | ||
Completeness [%] | 96.4 | ||
Redundancy | 3.3 | 3.4 | 3.3 |
CC(1/2) | 0.995 | 0.986 | 0.957 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.4 | 293.15 | 100 mM Tris(OHAc), 1.3 M (NH4)2SO4 |