8RCV
Crystal structure of HLA B*13:01 in complex with SVLNDIFSRL, an 10-mer epitope from SARS-CoV-2 Spike (S975-984)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
| Synchrotron site | Australian Synchrotron |
| Beamline | MX2 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2022-07-30 |
| Detector | DECTRIS EIGER X 16M |
| Wavelength(s) | 0.953732 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 50.061, 82.734, 109.520 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 41.370 - 1.650 |
| R-factor | 0.1799 |
| Rwork | 0.179 |
| R-free | 0.20090 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.042 |
| Data reduction software | XDS |
| Data scaling software | Aimless |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.21rc1_5127) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 45.660 | 1.680 |
| High resolution limit [Å] | 1.650 | 1.650 |
| Rmerge | 0.092 | 0.763 |
| Rmeas | 0.100 | 0.819 |
| Rpim | 0.037 | 0.296 |
| Number of reflections | 55444 | 2692 |
| <I/σ(I)> | 11.9 | 2.5 |
| Completeness [%] | 99.8 | 99.6 |
| Redundancy | 7.3 | 7.5 |
| CC(1/2) | 0.998 | 0.793 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 293 | 14% PEG3350 and 0.1M NaFormate |
