8QT2
Crystal structure of human Sirt2 in complex with the super-slow substrate TNFn-6
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-3 |
Synchrotron site | ESRF |
Beamline | MASSIF-3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-06-22 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 0.9677 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 36.041, 73.370, 55.119 |
Unit cell angles | 90.00, 95.41, 90.00 |
Refinement procedure
Resolution | 54.870 - 1.650 |
R-factor | 0.1714 |
Rwork | 0.170 |
R-free | 0.19680 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.805 |
Data reduction software | autoPROC |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 54.870 | 1.680 |
High resolution limit [Å] | 1.650 | 1.650 |
Rmerge | 0.068 | 0.692 |
Rmeas | 0.074 | 0.755 |
Rpim | 0.030 | 0.297 |
Total number of observations | 208487 | |
Number of reflections | 33906 | 1689 |
<I/σ(I)> | 14.4 | 2.5 |
Completeness [%] | 98.5 | |
Redundancy | 6.1 | 6.4 |
CC(1/2) | 0.999 | 0.814 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 26.5 % (w/v) PEG 3,350 in 0.1 M Bis-Tris pH 6.5. |