Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8Q5T

Nitrogenase Fe protein from Methanothermococcus thermolithotrophicus, monoclinic crystalline form at 2.31-A resolution

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSOLEIL BEAMLINE PROXIMA 1
Synchrotron siteSOLEIL
BeamlinePROXIMA 1
Temperature [K]100
Detector technologyPIXEL
Collection date2019-11-22
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.74013
Spacegroup nameP 1 21 1
Unit cell lengths52.821, 83.984, 116.598
Unit cell angles90.00, 91.14, 90.00
Refinement procedure
Resolution48.470 - 2.310
R-factor0.1963
Rwork0.194
R-free0.23490
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.006
RMSD bond angle0.874
Data reduction softwareautoPROC
Data scaling softwareautoPROC
Phasing softwarePHASER
Refinement softwarePHENIX ((1.20.1_4487: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]68.1402.350
High resolution limit [Å]2.3102.310
Rmerge0.2401.342
Rmeas0.2551.460
Rpim0.0850.566
Number of reflections450872223
<I/σ(I)>5.21.5
Completeness [%]100.0100
Redundancy8.76.5
CC(1/2)0.9900.517
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.6293.15The purified protein was crystallised at a final concentration of 6 mg/ml by spotting 0.5 ul of crystallisation solution with 0.5 ul of protein sample. Crystallisation was done anaerobically in a Coy tent containing a N2/H2 (97:3%) atmosphere. The screening was done at 20 degrees Celsius on 96-Well MRC 2-drop polystyrene (SWISSCI) plates containing 90 ul of crystallisation solution. The crystallisation solution in which crystals were obtained contained 30 % v/v 2-methyl-2,4-pentanediol, 100 mM sodium acetate, pH 4.6 and 20 mM calcium chloride.

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon