8Q2U
Crystal structure of YTHDC1 in complex with Compound 6 (ZA_308)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SLS BEAMLINE X06DA |
| Synchrotron site | SLS |
| Beamline | X06DA |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2022-06-17 |
| Detector | DECTRIS PILATUS 2M-F |
| Wavelength(s) | 1 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 40.000, 103.730, 42.100 |
| Unit cell angles | 90.00, 104.86, 90.00 |
Refinement procedure
| Resolution | 40.690 - 1.360 |
| R-factor | 0.219 |
| Rwork | 0.218 |
| R-free | 0.23240 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.006 |
| RMSD bond angle | 0.940 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 40.690 | 1.440 |
| High resolution limit [Å] | 1.360 | 1.360 |
| Number of reflections | 69363 | 11028 |
| <I/σ(I)> | 11.69 | |
| Completeness [%] | 96.6 | |
| Redundancy | 3.38 | |
| CC(1/2) | 0.998 | 0.704 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 295 | 25% PEG 3350, 0.2M Ammonium Sulphate, 0.1M Bis-Tris pH 6.5 |
