8PPN
Galectin-3 carbohydrate recognition domain in complex with thiodigalactoside at 1.8 resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-06-26 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 35.969, 57.350, 62.225 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.170 - 1.800 |
R-factor | 0.27149 |
Rwork | 0.267 |
R-free | 0.34611 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.651 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.170 | 1.840 |
High resolution limit [Å] | 1.800 | 1.800 |
Number of reflections | 11982 | 691 |
<I/σ(I)> | 17.2 | |
Completeness [%] | 96.7 | |
Redundancy | 5 | |
CC(1/2) | 0.967 | 0.959 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 298 | 0.1 M Tris-HCl, pH 8.5, 0.2 M MgCl2, 35% w/v PEG8000 |