8PEQ
Complex of diubiquitin-derived artificial binding protein (Affilin) variant Af2 with its target oncofetal fibronectin (fragment 7B8)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-02-19 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9184 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 168.650, 105.856, 78.993 |
Unit cell angles | 90.00, 93.53, 90.00 |
Refinement procedure
Resolution | 44.800 - 2.320 |
R-factor | 0.2008 |
Rwork | 0.198 |
R-free | 0.25100 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.017 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.000 | 30.000 | 2.400 |
High resolution limit [Å] | 2.300 | 20.000 | 2.300 |
Rmerge | 0.058 | 0.030 | 0.399 |
Rmeas | 0.068 | 0.037 | 0.474 |
Number of reflections | 59628 | 68 | 5777 |
<I/σ(I)> | 16.46 | ||
Completeness [%] | 96.8 | ||
Redundancy | 3.5 | ||
CC(1/2) | 0.998 | 0.998 | 0.839 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.3 | 298 | 500 mM lithium sulfate, 15% PEG 8000 (w/v) |