8P8R
Ex vivo Ym1 crystal structure
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
| Synchrotron site | PETRA III, EMBL c/o DESY |
| Beamline | P14 (MX2) |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2015-09-22 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.9763 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 50.518, 60.248, 60.116 |
| Unit cell angles | 90.00, 94.48, 90.00 |
Refinement procedure
| Resolution | 26.910 - 1.420 |
| R-factor | 0.182 |
| Rwork | 0.181 |
| R-free | 0.20500 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.010 |
| RMSD bond angle | 0.980 |
| Data reduction software | XDS (VERSION Jan 26, 2018 BUILT=20180808) |
| Data scaling software | Aimless (v. 0.7.4) |
| Phasing software | PHASER (v. 2.8.2) |
| Refinement software | BUSTER (2.10.3) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 59.900 | 1.500 |
| High resolution limit [Å] | 1.420 | 1.420 |
| Rmeas | 0.055 | 1.382 |
| Number of reflections | 66956 | 10672 |
| <I/σ(I)> | 7.2 | 1.19 |
| Completeness [%] | 98.1 | |
| Redundancy | 3.33 | |
| CC(1/2) | 0.998 | 0.395 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | IN CELL | 310 | Spontaneous in vivo crystallisation. Single ex vivo Ym1 crystals were harvested from the BAL fluid of mev/mev mice using mounted cryo-loops. |
