8P8G
Nitrogenase MoFe protein from A. vinelandii beta double mutant D353G/D357G
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-10-16 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.00002 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 167.486, 74.469, 208.467 |
Unit cell angles | 90.00, 103.25, 90.00 |
Refinement procedure
Resolution | 48.320 - 1.550 |
R-factor | 0.1566 |
Rwork | 0.155 |
R-free | 0.18720 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.012 |
RMSD bond angle | 1.035 |
Data reduction software | autoPROC |
Data scaling software | autoPROC |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 101.460 | 1.760 |
High resolution limit [Å] | 1.550 | 1.550 |
Rmerge | 0.177 | 1.890 |
Rmeas | 0.189 | 2.001 |
Rpim | 0.066 | 0.652 |
Number of reflections | 176043 | 8391 |
<I/σ(I)> | 8.1 | 1.8 |
Completeness [%] | 94.0 | 80.5 |
Redundancy | 8.1 | 9.3 |
CC(1/2) | 0.995 | 0.566 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 293.15 | The beta-D353G/D357G MoFe-protein was crystallized anaerobically at 17.5 mg/mL under 100% N2 atmosphere. The protein was spotted as a sitting drop to 96-Well MRC 2-Drop polystyrene Crystallization Plates (SWISSCI) containing 90 uL of crystallization solution in the reservoir. Each drop contained 0.5 uL of protein sample and 0.5 uL of crystallization solution. Crystals were obtained in the crystallization solution containing 10 % w/v Polyethylene glycol 10,000; 2 % v/v 1,4-Dioxane; 100 mM tri-Sodium citrate; pH 5.6, and 1 mM polyoxotungstate [TeW6O24]6- (TEW). Sealed plates were stored inside a Coy anaerobic chamber filled with an atmosphere of N2:H2 97:3 at 20 C. Crystals were soaked in the crystallization solution supplemented with 30% v/v ethylene glycol for a few seconds before freezing in liquid nitrogen. |