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8P0L

Crystal structure of human O-GlcNAcase in complex with an S-linked CKII peptide

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04-1
Synchrotron siteDiamond
BeamlineI04-1
Temperature [K]100
Detector technologyPIXEL
Collection date2018-04-15
DetectorDECTRIS EIGER2 XE 9M
Wavelength(s)0.9159
Spacegroup nameP 43 21 2
Unit cell lengths101.499, 101.499, 284.617
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution95.785 - 2.500
Rwork0.216
R-free0.27110
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.007
RMSD bond angle1.446
Data scaling softwareAimless
Refinement softwareREFMAC (5.8.0405)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]284.620284.6202.580
High resolution limit [Å]2.50010.3102.500
Rmerge0.1010.0320.840
Rmeas0.1080.0350.892
Rpim0.0370.0120.300
Number of reflections52629526294489
<I/σ(I)>14.4
Completeness [%]100.0
Redundancy15.713.316.5
CC(1/2)0.9991.0000.843
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP291.150.14 - 0.2 M triammonium citrate pH 7.5, 16-20 % PEG 3350

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PDB entries from 2024-05-15

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