8OTO
SARS-CoV-2 nsp10-16 methyltransferase in complex with AMP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-08-12 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.976200 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 167.860, 167.860, 51.592 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 42.070 - 1.800 |
R-factor | 0.1755 |
Rwork | 0.175 |
R-free | 0.18570 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.165 |
Data reduction software | XDS (1.20.1_4487) |
Data scaling software | XDS (1.20.1_4487) |
Phasing software | PHENIX (1.07) |
Refinement software | PHENIX (1.07) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.070 | 1.864 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.034 | 0.921 |
Rmeas | 0.047 | 1.303 |
Rpim | 0.034 | 0.921 |
Number of reflections | 77178 | 7540 |
<I/σ(I)> | 12.65 | 0.76 |
Completeness [%] | 99.8 | 98.51 |
Redundancy | 2 | 2 |
CC(1/2) | 0.999 | 0.418 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293.15 | 900 mM sodium fluoride, 100 mM 2-(N-morpholino)ethanesulfonic acid |