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8ORX

Structure of the murine LYVE-1 (lymphatic vessel endothelial receptor-1) hyaluronan binding domain in an unliganded state

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2017-09-29
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9686
Spacegroup nameC 1 2 1
Unit cell lengths31.370, 58.320, 52.350
Unit cell angles90.00, 94.62, 90.00
Refinement procedure
Resolution29.160 - 1.540
R-factor0.1706
Rwork0.169
R-free0.19470
Structure solution methodSAD
RMSD bond length0.006
RMSD bond angle0.857
Data reduction softwareautoPROC (1.0.5)
Data scaling softwareautoPROC (1.0.5)
Phasing softwarePHENIX (1.18.2_3874)
Refinement softwarePHENIX (1.21rc1_4899)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]29.1601.640
High resolution limit [Å]1.5401.540
Rmeas0.067
Number of reflections180902315
<I/σ(I)>16
Completeness [%]100.0
Redundancy6.5
CC(1/2)1.0000.800
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.529325% PEG3350 0.1M bis-Tris. Protein concentration 17.6 mg/ml.

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