8ORX
Structure of the murine LYVE-1 (lymphatic vessel endothelial receptor-1) hyaluronan binding domain in an unliganded state
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I24 |
| Synchrotron site | Diamond |
| Beamline | I24 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2017-09-29 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.9686 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 31.370, 58.320, 52.350 |
| Unit cell angles | 90.00, 94.62, 90.00 |
Refinement procedure
| Resolution | 29.160 - 1.540 |
| R-factor | 0.1706 |
| Rwork | 0.169 |
| R-free | 0.19470 |
| Structure solution method | SAD |
| RMSD bond length | 0.006 |
| RMSD bond angle | 0.857 |
| Data reduction software | autoPROC (1.0.5) |
| Data scaling software | autoPROC (1.0.5) |
| Phasing software | PHENIX (1.18.2_3874) |
| Refinement software | PHENIX (1.21rc1_4899) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 29.160 | 1.640 |
| High resolution limit [Å] | 1.540 | 1.540 |
| Rmeas | 0.067 | |
| Number of reflections | 18090 | 2315 |
| <I/σ(I)> | 16 | |
| Completeness [%] | 100.0 | |
| Redundancy | 6.5 | |
| CC(1/2) | 1.000 | 0.800 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 25% PEG3350 0.1M bis-Tris. Protein concentration 17.6 mg/ml. |






