8OJU
Crystal structure of the human IgD Fab - structure Fab3
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2021-11-29 |
| Detector | DECTRIS EIGER2 XE 9M |
| Wavelength(s) | 0.9179 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 42.893, 74.198, 70.915 |
| Unit cell angles | 90.00, 92.15, 90.00 |
Refinement procedure
| Resolution | 51.250 - 1.450 |
| R-factor | 0.1585 |
| Rwork | 0.157 |
| R-free | 0.18930 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.007 |
| RMSD bond angle | 0.932 |
| Data reduction software | DIALS |
| Data scaling software | Aimless |
| Phasing software | PHASER |
| Refinement software | PHENIX ((1.19.2_4158: ???)) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 70.870 | 1.470 |
| High resolution limit [Å] | 1.450 | 1.450 |
| Rmerge | 0.077 | |
| Rpim | 0.032 | 0.661 |
| Number of reflections | 78636 | 3890 |
| <I/σ(I)> | 11.2 | 1.2 |
| Completeness [%] | 100.0 | 100 |
| Redundancy | 6.5 | 5.1 |
| CC(1/2) | 0.999 | 0.462 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 291 | 16% PEG 6000 and 0.1M tri-sodium citrate |
