8OJ3
Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418 (rotated state)
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 173 |
Detector technology | PIXEL |
Collection date | 2022-07-05 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 300.290, 294.060, 442.550 |
Unit cell angles | 90.00, 99.77, 90.00 |
Refinement procedure
Resolution | 266.820 - 3.500 |
R-factor | 0.2489 |
Rwork | 0.249 |
R-free | 0.29270 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.005 |
RMSD bond angle | 0.960 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX (1.19rc4-4035) |
Refinement software | PHENIX (1.19rc4_4035) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 266.820 | 266.820 | 3.550 |
High resolution limit [Å] | 3.500 | 50.000 | 3.500 |
Rmerge | 0.516 | 0.051 | 3.239 |
Rmeas | 0.534 | 0.053 | 3.356 |
Rpim | 0.139 | ||
Number of reflections | 929602 | 271 | 38940 |
<I/σ(I)> | 4.86 | ||
Completeness [%] | 97.9 | ||
Redundancy | 14.6 | ||
CC(1/2) | 0.997 | 0.998 | 0.090 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277.15 | PEG 20K, KSCN, Mg Acetate, K - acetate, Bis-Tris-Acetate, Glycerol, Spermidine, phyllanthoside |