Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8JT1

COLLAGENASE FROM GRIMONTIA (VIBRIO) HOLLISAE 1706B COMPLEXED WITH GLY-PRO-HYP-GLY-PRO-HYP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL26B1
Synchrotron siteSPring-8
BeamlineBL26B1
Temperature [K]100
Detector technologyPIXEL
Collection date2023-02-03
DetectorDECTRIS EIGER X 4M
Wavelength(s)1.0000
Spacegroup nameC 1 2 1
Unit cell lengths178.017, 74.890, 135.134
Unit cell angles90.00, 126.02, 90.00
Refinement procedure
Resolution37.440 - 2.000
R-factor0.1778
Rwork0.176
R-free0.21360
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.006
RMSD bond angle0.786
Data reduction softwareXDS (Jan 10, 2022)
Data scaling softwareXDS (Jan 10, 2022)
Phasing softwarePHENIX (1.20.1_4487)
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]37.4402.120
High resolution limit [Å]2.0002.000
Rmerge0.0800.662
Rmeas0.0930.762
Number of reflections9651315381
<I/σ(I)>12.52.24
Completeness [%]99.398.7
Redundancy3.853.96
CC(1/2)0.8980.761
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.52770.2M CALCIUM ACETATE, 0.1M MES SODIUM HYDROXIDE PH 6.0, 20% (W/V) POLYETHYLENE GLYCOL 8000

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon