8JMK
Structure of Helicobacter pylori Soj mutant, D41A bound to DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE TPS 05A |
Synchrotron site | NSRRC |
Beamline | TPS 05A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2022-12-07 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 0.99984 |
Spacegroup name | P 1 |
Unit cell lengths | 75.200, 75.198, 81.124 |
Unit cell angles | 71.25, 71.38, 67.70 |
Refinement procedure
Resolution | 27.879 - 2.700 |
R-factor | 0.2276 |
Rwork | 0.224 |
R-free | 0.30340 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6iuc |
RMSD bond length | 0.010 |
RMSD bond angle | 1.619 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.2_1309) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 2.690 |
High resolution limit [Å] | 2.600 | 5.590 | 2.600 |
Rmerge | 0.042 | 0.021 | 0.337 |
Rmeas | 0.030 | 0.477 | |
Rpim | 0.021 | 0.337 | |
Number of reflections | 44627 | 4505 | 4466 |
<I/σ(I)> | 10.7 | ||
Completeness [%] | 96.4 | 97.3 | 96.6 |
Redundancy | 1.9 | 1.9 | 1.9 |
CC(1/2) | 0.756 | 0.998 | 0.756 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 298 | 25% Ethylene glycol |