8JKS
T95R mutant IRF4 DNA-binding domain bound to an DNA containing GAGA motif
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL02U1 |
Synchrotron site | SSRF |
Beamline | BL02U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-05-13 |
Detector | DECTRIS EIGER2 S 9M |
Wavelength(s) | 0.9752 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 52.610, 68.010, 246.600 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.020 - 3.300 |
R-factor | 0.2376 |
Rwork | 0.235 |
R-free | 0.28690 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 8jkl |
RMSD bond length | 0.003 |
RMSD bond angle | 0.987 |
Data reduction software | xia2 |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.030 | 3.390 |
High resolution limit [Å] | 3.300 | 3.300 |
Rmerge | 0.251 | 1.382 |
Rmeas | 0.262 | 1.437 |
Rpim | 0.072 | 0.388 |
Total number of observations | 180176 | 13384 |
Number of reflections | 13978 | 981 |
<I/σ(I)> | 10.1 | 2.8 |
Completeness [%] | 99.7 | |
Redundancy | 12.9 | 13.6 |
CC(1/2) | 0.995 | 0.993 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 0.1 M sodium citrate (pH 5.0) and 10% (w/v) PEG 6000 |