8I7P
Crystal structure of Ricin A chain bound with N2-(2-amino-4-oxo-3,4-dihydropteridine-7-carbonyl)glycyl-L-tyrosine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 95 |
Detector technology | PIXEL |
Collection date | 2019-11-29 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 67.803, 67.803, 141.380 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.930 - 1.600 |
R-factor | 0.21563 |
Rwork | 0.215 |
R-free | 0.23235 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.142 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.930 | 1.690 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmeas | 0.042 | 0.801 |
Rpim | 0.012 | 0.214 |
Total number of observations | 571567 | 84549 |
Number of reflections | 43942 | 6237 |
<I/σ(I)> | 35.6 | 4.1 |
Completeness [%] | 99.2 | |
Redundancy | 13 | 13.6 |
CC(1/2) | 1.000 | 0.912 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4 | 296 | PEG2000, Lithium sulfate, Sodium acetate |