8I1N
Crystal structure of APSK2 domain from human PAPSS2 in complex with endogenous APS and ADP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-01-05 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9875 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 75.594, 71.329, 89.986 |
Unit cell angles | 90.00, 114.82, 90.00 |
Refinement procedure
Resolution | 44.190 - 2.800 |
R-factor | 0.2116 |
Rwork | 0.208 |
R-free | 0.28260 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ofx |
RMSD bond length | 0.011 |
RMSD bond angle | 1.400 |
Data reduction software | DENZO |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.20) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.900 |
High resolution limit [Å] | 2.800 | 6.030 | 2.800 |
Rmerge | 0.974 | 0.098 | 0.854 |
Total number of observations | 132290 | ||
Number of reflections | 21315 | 2207 | 2014 |
<I/σ(I)> | 3.8 | ||
Completeness [%] | 99.0 | 99.6 | 96.1 |
Redundancy | 6.2 | 6.5 | 4.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.2 M Ammonium citrate dihydrate, pH7.0 and 20% w/v PEG3350 |