8HU5
Crystal structure of DNA octamer containing GuNA[Me,tBu]
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SPRING-8 BEAMLINE BL44XU |
| Synchrotron site | SPring-8 |
| Beamline | BL44XU |
| Temperature [K] | 90 |
| Detector technology | PIXEL |
| Collection date | 2019-06-26 |
| Detector | DECTRIS EIGER X 16M |
| Wavelength(s) | 0.9199 |
| Spacegroup name | P 43 21 2 |
| Unit cell lengths | 42.494, 42.494, 24.315 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 21.100 - 0.930 |
| R-factor | 0.1944 |
| Rwork | 0.192 |
| R-free | 0.21340 |
| Structure solution method | SAD |
| RMSD bond length | 0.008 |
| RMSD bond angle | 2.399 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | SHELXDE |
| Refinement software | PHENIX (1.20-1-4487) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 21.100 | 10.000 | 0.990 |
| High resolution limit [Å] | 0.930 | 2.770 | 0.930 |
| Rmerge | 0.083 | 0.103 | 0.237 |
| Rmeas | 0.090 | 0.115 | 0.281 |
| Number of reflections | 27813 | 1057 | 3969 |
| <I/σ(I)> | 15.97 | ||
| Completeness [%] | 97.7 | ||
| Redundancy | 6.56 | ||
| CC(1/2) | 0.990 | 0.977 | 0.926 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293.15 | 10% v/v (+/-)-2-Methyl-2,4-pentanediol, 0.040M Sodium cacodylate trihydrate pH 6.0, 0.012M Spermine tetrahydrochloride, 0.012M Sodium chloride, 0.080M Potassium chloride |






