Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8HU5

Crystal structure of DNA octamer containing GuNA[Me,tBu]

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL44XU
Synchrotron siteSPring-8
BeamlineBL44XU
Temperature [K]90
Detector technologyPIXEL
Collection date2019-06-26
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9199
Spacegroup nameP 43 21 2
Unit cell lengths42.494, 42.494, 24.315
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution21.100 - 0.930
R-factor0.1944
Rwork0.192
R-free0.21340
Structure solution methodSAD
RMSD bond length0.008
RMSD bond angle2.399
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareSHELXDE
Refinement softwarePHENIX (1.20-1-4487)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]21.10010.0000.990
High resolution limit [Å]0.9302.7700.930
Rmerge0.0830.1030.237
Rmeas0.0900.1150.281
Number of reflections2781310573969
<I/σ(I)>15.97
Completeness [%]97.7
Redundancy6.56
CC(1/2)0.9900.9770.926
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6293.1510% v/v (+/-)-2-Methyl-2,4-pentanediol, 0.040M Sodium cacodylate trihydrate pH 6.0, 0.012M Spermine tetrahydrochloride, 0.012M Sodium chloride, 0.080M Potassium chloride

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon