8HHU
Crystal structure of the SARS-CoV-2 main protease in complex with SY110
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-07-08 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.976246 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 98.704, 82.411, 51.946 |
Unit cell angles | 90.00, 114.69, 90.00 |
Refinement procedure
Resolution | 44.840 - 2.258 |
R-factor | 0.1873 |
Rwork | 0.185 |
R-free | 0.22680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7c7p |
RMSD bond length | 0.008 |
RMSD bond angle | 0.970 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | BUSTER (2.10.4 (16-JUL-2021)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 60.680 | 2.330 |
High resolution limit [Å] | 2.258 | 2.258 |
Rmerge | 0.067 | 0.619 |
Rmeas | 0.072 | 0.672 |
Rpim | 0.028 | 0.258 |
Number of reflections | 17608 | 1599 |
<I/σ(I)> | 14 | 3 |
Completeness [%] | 98.8 | |
Redundancy | 6.8 | |
CC(1/2) | 0.998 | 0.968 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 291 | 0.2 M BIS-TRIS pH 5.5, 25% w/v PEG 3350 |