8HFN
Crystal Structure of Mycobacterium smegmatis MshC in Complex with Compound 7b
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-09-24 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.774900 |
Spacegroup name | P 61 |
Unit cell lengths | 166.021, 166.021, 51.359 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 54.340 - 1.980 |
R-factor | 0.1861 |
Rwork | 0.185 |
R-free | 0.20790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3c8z |
RMSD bond length | 0.004 |
RMSD bond angle | 0.756 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 143.780 | 2.030 |
High resolution limit [Å] | 1.980 | 1.980 |
Rmerge | 0.088 | 1.330 |
Rmeas | 0.093 | 1.397 |
Rpim | 0.029 | 0.427 |
Total number of observations | 579501 | 41640 |
Number of reflections | 56869 | 3944 |
<I/σ(I)> | 13.3 | 2.3 |
Completeness [%] | 100.0 | |
Redundancy | 10.2 | 10.6 |
CC(1/2) | 0.998 | 0.867 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | Holo protein at 10 mg/mL in 10 mM Tris-HCl pH 7, 100 mM NaCl and 2.5 mM 2-mercaptoethanol was mixed withf 1 mM compound 7b and 1 mM TCEP (final concentrations) and incubated on ice for 1 hr. Crystals of MshC in complex with compound 7b were grown in the Morpheus screen by dispensing droplets comprised of 300 nL protein mixture and 150 nL reservoir solution containing PEG550MME 20% (v/v), PEG20000 10% (w/v), Morpheus divalent 60 mM and Morpheus buffer system 3 pH 8.5. |