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8HFN

Crystal Structure of Mycobacterium smegmatis MshC in Complex with Compound 7b

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-1
Synchrotron siteESRF
BeamlineID23-1
Temperature [K]100
Detector technologyPIXEL
Collection date2021-09-24
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.774900
Spacegroup nameP 61
Unit cell lengths166.021, 166.021, 51.359
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution54.340 - 1.980
R-factor0.1861
Rwork0.185
R-free0.20790
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3c8z
RMSD bond length0.004
RMSD bond angle0.756
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.2)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]143.7802.030
High resolution limit [Å]1.9801.980
Rmerge0.0881.330
Rmeas0.0931.397
Rpim0.0290.427
Total number of observations57950141640
Number of reflections568693944
<I/σ(I)>13.32.3
Completeness [%]100.0
Redundancy10.210.6
CC(1/2)0.9980.867
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.5293Holo protein at 10 mg/mL in 10 mM Tris-HCl pH 7, 100 mM NaCl and 2.5 mM 2-mercaptoethanol was mixed withf 1 mM compound 7b and 1 mM TCEP (final concentrations) and incubated on ice for 1 hr. Crystals of MshC in complex with compound 7b were grown in the Morpheus screen by dispensing droplets comprised of 300 nL protein mixture and 150 nL reservoir solution containing PEG550MME 20% (v/v), PEG20000 10% (w/v), Morpheus divalent 60 mM and Morpheus buffer system 3 pH 8.5.

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PDB entries from 2024-05-15

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