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8HCH

Crystal structure of mTREX1-Uridine complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSRRC BEAMLINE BL13B1
Synchrotron siteNSRRC
BeamlineBL13B1
Temperature [K]100
Detector technologyCCD
Collection date2020-03-17
DetectorADSC QUANTUM 315r
Wavelength(s)1.00000
Spacegroup nameP 1 21 1
Unit cell lengths67.632, 81.149, 93.653
Unit cell angles90.00, 103.51, 90.00
Refinement procedure
Resolution24.690 - 2.000
R-factor0.1901
Rwork0.187
R-free0.22750
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5yws
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareMOLREP
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]30.00030.0002.030
High resolution limit [Å]2.0005.4202.000
Rmerge0.0630.0380.495
Rmeas0.0710.0440.572
Rpim0.0340.0220.280
Total number of observations285244
Number of reflections6645733643283
<I/σ(I)>12.4
Completeness [%]99.697.699.6
Redundancy4.34.13.9
CC(1/2)0.9970.725
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP29312.5% v/v MPD; 12.5% PEG 1000; 12.5% w/v PEG 3350, 0.2% w/v Cytidine, 0.2% w/v Inosine, 0.2% w/v Ribavirin, 0.2% w/v Thymidine, 0.2% w/v Uridine, 0.1M Imidazole, 0.1M MES monohydrate (acid), pH6.5

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PDB entries from 2024-05-15

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