8H4V
Mincle CRD complex with PGL trisaccharide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 95 |
Detector technology | PIXEL |
Collection date | 2022-06-25 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9800 |
Spacegroup name | P 31 1 2 |
Unit cell lengths | 75.298, 75.298, 111.400 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 42.350 - 2.400 |
R-factor | 0.2578 |
Rwork | 0.256 |
R-free | 0.28860 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4zrw |
RMSD bond length | 0.005 |
RMSD bond angle | 0.786 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.360 | 2.490 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.123 | 4.059 |
Rpim | 0.021 | 0.627 |
Number of reflections | 14310 | 14310 |
<I/σ(I)> | 18 | 1.5 |
Completeness [%] | 100.0 | 100 |
Redundancy | 40.2 | 42.6 |
CC(1/2) | 0.993 | 0.601 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 0.1M imidazole (pH 7.5), 0.2M sodium acetate trihydrate, 10%(w/v) PEG 8000 |