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8H24

Leucine-rich alpha-2-glycoprotein 1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPAL/PLS BEAMLINE 7A (6B, 6C1)
Synchrotron sitePAL/PLS
Beamline7A (6B, 6C1)
Temperature [K]100
Detector technologyPIXEL
Collection date2017-05-17
DetectorDECTRIS EIGER X 9M
Wavelength(s)1.0
Spacegroup nameP 63 2 2
Unit cell lengths143.018, 143.018, 113.728
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution30.270 - 2.450
R-factor0.1885
Rwork0.186
R-free0.21940
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)NGL3 3zyn
RMSD bond length0.009
RMSD bond angle1.204
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Refinement softwarePHENIX (1.15.2)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.540
High resolution limit [Å]2.4505.2802.450
Rmerge0.1750.0750.790
Rmeas0.1770.0760.800
Rpim0.0280.0130.127
Total number of observations1025968
Number of reflections2562327652503
<I/σ(I)>4.4
Completeness [%]99.999.4100
Redundancy4037.439
CC(1/2)0.9990.965
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP4.5291200mM lithium sulfate, 100mM sodium acetate pH4.5, 48% PEG 400 (v/v)

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PDB entries from 2024-05-15

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