8GRG
Crystal structure of a constitutively active mutant of the alpha gamma heterodimer of human IDH3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-08 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 137.513, 73.527, 86.618 |
Unit cell angles | 90.00, 107.36, 90.00 |
Refinement procedure
Resolution | 37.312 - 2.699 |
R-factor | 0.185 |
Rwork | 0.184 |
R-free | 0.20980 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5grh |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX (1.14_3260) |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.800 |
High resolution limit [Å] | 2.699 | 5.810 | 2.700 |
Rmerge | 0.123 | 0.087 | 0.484 |
Rmeas | 0.132 | 0.094 | 0.520 |
Rpim | 0.049 | 0.036 | 0.189 |
Number of reflections | 22588 | 2308 | 2224 |
<I/σ(I)> | 11 | ||
Completeness [%] | 99.8 | 98.4 | 99.9 |
Redundancy | 7.4 | 7.2 | 7.5 |
CC(1/2) | 0.992 | 0.947 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | 0.1 M MES (pH 6.0) and 20% (w/v) PEG MME 2000 |