8GJT
Crystal Structure of HIV-1 LM/HT Clade A/E CRF01 GP120 Core in Complex with TFH-I-116-D1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-06-12 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 64.670, 66.010, 87.830 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 52.770 - 3.500 |
R-factor | 0.2563 |
Rwork | 0.254 |
R-free | 0.30660 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 0.794 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX ((1.19.1_4122: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 52.770 | 3.690 |
High resolution limit [Å] | 3.500 | 3.500 |
Rpim | 0.147 | 0.729 |
Number of reflections | 4021 | 601 |
<I/σ(I)> | 2.8 | 0.6 |
Completeness [%] | 80.6 | |
Redundancy | 2.9 | 3 |
CC(1/2) | 0.970 | 0.330 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 294 | 10% PEG 3350 5% PEG 400 0.1M HEPES pH 7.5 |