8G6A
Wildtype PTP1b in complex with DES6016
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-21 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 88.350, 88.350, 162.660 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 31.950 - 1.620 |
R-factor | 0.17997 |
Rwork | 0.178 |
R-free | 0.21686 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | in-house structure of same protein |
RMSD bond length | 0.030 |
RMSD bond angle | 2.590 |
Data reduction software | xia2 |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 32.530 | 1.650 |
High resolution limit [Å] | 1.620 | 1.620 |
Rmerge | 0.089 | 2.001 |
Rpim | 0.026 | 0.629 |
Number of reflections | 82423 | 4046 |
<I/σ(I)> | 15.3 | 1 |
Completeness [%] | 100.0 | 100 |
Redundancy | 13 | 11 |
CC(1/2) | 0.999 | 0.517 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 6.2 | 278 | Reservoir solution: 50 mM MES (pH 6.2), 14% PEG6000, 50 mM MgCl2, Protein solution: 10.3 mg/ml PTP-1B 1-298 in 25 mM Hepes pH 7.2, 150 mM NaCl, 1 mM EDTA, 2 mM DTT |