8FUD
Crystal structure of Vps29 in complex with Chaetomium thermophilum Vps5 (71 to 80)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-02-21 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.953644 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 54.051, 68.597, 211.139 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.620 - 1.680 |
R-factor | 0.1782 |
Rwork | 0.177 |
R-free | 0.20250 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.134 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.460 | 1.710 |
High resolution limit [Å] | 1.680 | 1.680 |
Rmerge | 0.043 | 0.301 |
Rmeas | 0.047 | 0.323 |
Rpim | 0.017 | 0.116 |
Total number of observations | 332485 | 15268 |
Number of reflections | 44804 | 2057 |
<I/σ(I)> | 18.6 | 4 |
Completeness [%] | 98.9 | |
Redundancy | 7.4 | 7.4 |
CC(1/2) | 0.999 | 0.972 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 40 mM KH2PO4, 16% PEG8000 and 5% glycerol |