8FK4
Structure of the catalytic domain of Streptococcus mutans GtfB complexed to acarbose in orthorhombic space group P21212
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-11 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 299.312, 215.766, 219.334 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.882 - 3.250 |
R-factor | 0.2252 |
Rwork | 0.224 |
R-free | 0.25510 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.543 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.440 | 3.310 |
High resolution limit [Å] | 3.250 | 3.250 |
Rmerge | 0.184 | |
Rmeas | 0.199 | |
Rpim | 0.076 | 0.972 |
Number of reflections | 222519 | 10910 |
<I/σ(I)> | 7.4 | 1 |
Completeness [%] | 99.9 | |
Redundancy | 6.8 | 7.1 |
CC(1/2) | 0.996 | 0.394 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 2 M ammonium sulfate, 0.1 M Bis-Tris; the complex was obtained by co-crystallization with a 1:10 molar ratio of acarbose (final concentration 1-2 mM) |