8FFB
Crystal structure of iron bound Dps protein (PA0962) from Pseudomonas aeruginosa (orthorhombic form)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 19-ID |
Synchrotron site | NSLS-II |
Beamline | 19-ID |
Temperature [K] | 291 |
Detector technology | PIXEL |
Collection date | 2020-12-15 |
Detector | DECTRIS EIGER2 XE 9M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 131.081, 131.837, 157.817 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.860 - 2.250 |
R-factor | 0.1856 |
Rwork | 0.183 |
R-free | 0.23300 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 0.917 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (dev_4126) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.860 | 2.290 |
High resolution limit [Å] | 2.250 | 2.250 |
Rmerge | 0.128 | 1.245 |
Rmeas | 0.139 | 1.353 |
Rpim | 0.053 | 0.526 |
Total number of observations | 866553 | 41723 |
Number of reflections | 129943 | 6378 |
<I/σ(I)> | 11.2 | 1.6 |
Completeness [%] | 100.0 | |
Redundancy | 6.7 | 6.5 |
CC(1/2) | 0.997 | 0.625 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 291 | 1 M (NH4)2SO4, 1M KCl, 100 mM HEPES. Soaking: crystals were transferred to a solution containing 80% crystallant, 20% glycerol and 50 mM FeCl2 and soaked for 10 minutes. Samples were harvested directly from the soaking solution. |