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8EJB

Bruton's tyrosine kinase in complex with 3-{[4-(1-acetylpiperidin-4-yl)phenyl]amino}-5-[(3R)-3-(3-methyl-2-oxoimidazolidin-1-yl)piperidin-1-yl]pyrazine-2-carboxamide

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-D
Synchrotron siteAPS
Beamline23-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2018-08-01
DetectorDECTRIS PILATUS 6M
Wavelength(s)1.0
Spacegroup nameP 21 21 21
Unit cell lengths38.210, 76.240, 105.870
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution52.940 - 1.580
R-factor0.1692
Rwork0.168
R-free0.19100
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3gen
RMSD bond length0.009
RMSD bond angle0.954
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]76.2401.620
High resolution limit [Å]1.5801.580
Rmerge0.1361.677
Rmeas0.1461.793
Rpim0.0510.864
Number of reflections429963068
<I/σ(I)>10.21.3
Completeness [%]99.498.6
Redundancy7.97.9
CC(1/2)0.9980.549
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP27712.5% w/v PEG 1000, 12.5% w/v PEG 3350, 12.5% v/v MPD 0.02 M sodium formate, 0.02 M ammonium acetate, 0.02 M trisodium citrate, 0.02 M sodium potassium l-tartrate, 0.02 M sodium oxamate 0.1 M MES/imidazole pH 6.5

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PDB entries from 2024-05-15

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