8EJB
Bruton's tyrosine kinase in complex with 3-{[4-(1-acetylpiperidin-4-yl)phenyl]amino}-5-[(3R)-3-(3-methyl-2-oxoimidazolidin-1-yl)piperidin-1-yl]pyrazine-2-carboxamide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-08-01 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 38.210, 76.240, 105.870 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 52.940 - 1.580 |
R-factor | 0.1692 |
Rwork | 0.168 |
R-free | 0.19100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3gen |
RMSD bond length | 0.009 |
RMSD bond angle | 0.954 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 76.240 | 1.620 |
High resolution limit [Å] | 1.580 | 1.580 |
Rmerge | 0.136 | 1.677 |
Rmeas | 0.146 | 1.793 |
Rpim | 0.051 | 0.864 |
Number of reflections | 42996 | 3068 |
<I/σ(I)> | 10.2 | 1.3 |
Completeness [%] | 99.4 | 98.6 |
Redundancy | 7.9 | 7.9 |
CC(1/2) | 0.998 | 0.549 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 12.5% w/v PEG 1000, 12.5% w/v PEG 3350, 12.5% v/v MPD 0.02 M sodium formate, 0.02 M ammonium acetate, 0.02 M trisodium citrate, 0.02 M sodium potassium l-tartrate, 0.02 M sodium oxamate 0.1 M MES/imidazole pH 6.5 |