8EGI
X-ray structure of carbonmonoxy hemoglobin in complex with VZHE039-NO
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-04-22 |
Detector | DECTRIS EIGER R 4M |
Wavelength(s) | 1.5406 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 62.893, 82.562, 105.240 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.858 - 2.300 |
R-factor | 0.187 |
Rwork | 0.184 |
R-free | 0.25120 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ic0 |
Data reduction software | CrysalisPro (41.64.69a) |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 28.860 | 28.860 | 2.380 |
High resolution limit [Å] | 2.300 | 8.910 | 2.300 |
Rmerge | 0.105 | 0.034 | 0.459 |
Rmeas | 0.113 | 0.036 | 0.490 |
Rpim | 0.039 | 0.013 | 0.169 |
Total number of observations | 202614 | 3464 | 19870 |
Number of reflections | 25048 | 486 | 2405 |
<I/σ(I)> | 15.7 | 49 | 5.1 |
Completeness [%] | 99.9 | 97.2 | 99.8 |
Redundancy | 8.1 | 7.1 | 8.3 |
CC(1/2) | 0.998 | 0.999 | 0.943 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 30 mg/dL of CO-ligated Hb crystallized using 10-20% PEG 6000, 100 mM Hepes, pH 7.4 |