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8EFX

Structure of OtDUB DUB Domain disulfide crosslinked with Ubiquitin

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2021-03-11
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.97918
Spacegroup nameP 2 21 21
Unit cell lengths42.399, 83.008, 99.354
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution63.700 - 1.850
R-factor0.1998
Rwork0.198
R-free0.22920
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1ubq 6ups
RMSD bond length0.007
RMSD bond angle0.792
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwareHKL-3000
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]63.7001.920
High resolution limit [Å]1.8401.850
Number of reflections308673002
<I/σ(I)>11.57
Completeness [%]99.7
Redundancy6.56
CC(1/2)0.9970.481
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2940.16M Magnesium chloride, 0.08M Tris at pH 8.5, 24% PEG 8000 and 20% glycerol

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