8EA5
NKG2D complexed with inhibitor 1a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-12-16 |
Detector | DECTRIS EIGER2 X 9M |
Wavelength(s) | 1.0 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 89.107, 43.671, 77.766 |
Unit cell angles | 90.00, 115.75, 90.00 |
Refinement procedure
Resolution | 40.130 - 1.630 |
R-factor | 0.1898 |
Rwork | 0.189 |
R-free | 0.20890 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1mpu |
RMSD bond length | 0.013 |
RMSD bond angle | 1.515 |
Data reduction software | DIALS |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.17.1_3660: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.130 | 40.140 | 1.660 |
High resolution limit [Å] | 1.630 | 4.420 | 1.630 |
Rmeas | 0.082 | 0.040 | 0.828 |
Rpim | 0.044 | 0.021 | 0.438 |
Total number of observations | 112256 | 6352 | 5569 |
Number of reflections | 33491 | 1778 | 1619 |
<I/σ(I)> | 7 | 13.3 | 1.9 |
Completeness [%] | 98.7 | 100 | 95.4 |
Redundancy | 3.4 | 3.6 | 3.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.15 - 0.22 M NaNO3 20- 31 % (w/v) PEG 3350 |