8E1B
Crystal Structure of Nanobody VHH108 Specific for PA14 Cif
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-01-22 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.920099 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 30.871, 112.147, 33.198 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.200 - 1.650 |
R-factor | 0.2117 |
Rwork | 0.211 |
R-free | 0.21480 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4jvp |
RMSD bond length | 0.007 |
RMSD bond angle | 0.836 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 33.200 | 1.709 |
High resolution limit [Å] | 1.650 | 1.650 |
Rmerge | 0.054 | 1.192 |
Rmeas | 0.059 | 1.319 |
Rpim | 0.024 | 0.561 |
Number of reflections | 14566 | 1430 |
<I/σ(I)> | 15.12 | 1.14 |
Completeness [%] | 99.9 | 99.93 |
Redundancy | 6.3 | 5.4 |
CC(1/2) | 0.999 | 0.623 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 292.8 | 200 mM sodium thiocyanate, 20% (w/v) PEG3350 |