8DVG
Structure of KRAS WT(7-16)-HLA-A*03:01
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-04-02 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97931 |
Spacegroup name | P 6 2 2 |
Unit cell lengths | 152.893, 152.893, 85.195 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 19.648 - 2.594 |
R-factor | 0.1931 |
Rwork | 0.191 |
R-free | 0.22760 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6o9b |
RMSD bond length | 0.002 |
RMSD bond angle | 0.517 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.21) |
Phasing software | MOLREP |
Refinement software | PHENIX (1.16) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.650 | 19.650 | 2.660 |
High resolution limit [Å] | 2.590 | 11.620 | 2.600 |
Rmerge | 0.240 | 0.071 | 1.186 |
Rmeas | 0.252 | 0.075 | 1.250 |
Number of reflections | 18625 | 206 | 1330 |
<I/σ(I)> | 8.97 | ||
Completeness [%] | 99.5 | ||
Redundancy | 10.3 | ||
CC(1/2) | 0.993 | 0.998 | 0.757 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.2M ammonium sulfate 0.1M sodium cacodylate pH 6.5 30 % w/v PEG 8,000 |