8DSM
Human NAMPT in complex with inhibitor ZN-4-3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2021-12-20 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.9787 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 87.991, 94.424, 246.445 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.088 - 2.750 |
R-factor | 0.1958 |
Rwork | 0.194 |
R-free | 0.23780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2e5d |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 20.090 | 20.090 | 2.830 |
High resolution limit [Å] | 2.750 | 11.670 | 2.750 |
Rmerge | 0.188 | 0.042 | 1.391 |
Rmeas | 0.202 | 0.046 | 1.493 |
Rpim | 0.074 | 0.018 | 0.541 |
Total number of observations | 401692 | 4071 | 33098 |
Number of reflections | 54145 | 645 | 4379 |
<I/σ(I)> | 10.1 | 28.3 | 1.7 |
Completeness [%] | 99.7 | 80.4 | 100 |
Redundancy | 7.4 | 6.3 | 7.6 |
CC(1/2) | 0.997 | 0.998 | 0.695 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 290 | 0.1 M Tris-HCl, pH 8, 0.1 M KCl, and 24-28% PEG 2000 MME |