8DSE
Human NAMPT in complex with substrate NAM and activator quercitrin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-06-22 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.9787 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 60.865, 106.786, 82.689 |
Unit cell angles | 90.00, 96.61, 90.00 |
Refinement procedure
Resolution | 19.858 - 1.428 |
R-factor | 0.1658 |
Rwork | 0.165 |
R-free | 0.18350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2e5d |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | MOLREP |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.860 | 19.860 | 1.450 |
High resolution limit [Å] | 1.428 | 7.820 | 1.430 |
Rmerge | 0.081 | 0.042 | 0.454 |
Rmeas | 0.095 | 0.049 | 0.632 |
Rpim | 0.049 | 0.026 | 0.438 |
Total number of observations | 4132 | 11890 | |
Number of reflections | 190913 | 1153 | 6809 |
<I/σ(I)> | 7.7 | 16.4 | 1.1 |
Completeness [%] | 98.5 | 93.8 | 70.8 |
Redundancy | 3.5 | 3.6 | 1.7 |
CC(1/2) | 0.996 | 0.995 | 0.672 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 290 | 0.1 M Tris-HCl, pH 8.5, 0.2 M NaCl, 20% glycerol and 13-18% PEG 3350 |