8DSC
Human NAMPT in complex with substrate NAM and small molecule activator NP-A1-R
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-08-17 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.9787 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 60.376, 106.338, 82.806 |
Unit cell angles | 90.00, 96.45, 90.00 |
Refinement procedure
Resolution | 36.917 - 1.321 |
R-factor | 0.1603 |
Rwork | 0.160 |
R-free | 0.17470 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2e5d |
Data reduction software | DENZO |
Data scaling software | Aimless (0.7.2) |
Phasing software | MOLREP |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 51.300 | 51.300 | 1.340 |
High resolution limit [Å] | 1.320 | 7.200 | 1.320 |
Rmerge | 0.065 | 0.042 | 0.655 |
Rmeas | 0.076 | 0.050 | 0.790 |
Rpim | 0.039 | 0.026 | 0.436 |
Total number of observations | 918063 | 5647 | 38046 |
Number of reflections | 245312 | 1552 | 11964 |
<I/σ(I)> | 9.6 | 24.1 | 1.8 |
Completeness [%] | 99.9 | 99.2 | 99.1 |
Redundancy | 3.7 | 3.6 | 3.2 |
CC(1/2) | 0.998 | 0.995 | 0.646 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 290 | 0.1 M Tris-HCl, pH 8.5, 0.2 M NaCl, 20% glycerol and 13-18% PEG 3350 |