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8DSC

Human NAMPT in complex with substrate NAM and small molecule activator NP-A1-R

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2018-08-17
DetectorRAYONIX MX-300
Wavelength(s)0.9787
Spacegroup nameP 1 21 1
Unit cell lengths60.376, 106.338, 82.806
Unit cell angles90.00, 96.45, 90.00
Refinement procedure
Resolution36.917 - 1.321
R-factor0.1603
Rwork0.160
R-free0.17470
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2e5d
Data reduction softwareDENZO
Data scaling softwareAimless (0.7.2)
Phasing softwareMOLREP
Refinement softwarePHENIX (1.16_3549)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]51.30051.3001.340
High resolution limit [Å]1.3207.2001.320
Rmerge0.0650.0420.655
Rmeas0.0760.0500.790
Rpim0.0390.0260.436
Total number of observations918063564738046
Number of reflections245312155211964
<I/σ(I)>9.624.11.8
Completeness [%]99.999.299.1
Redundancy3.73.63.2
CC(1/2)0.9980.9950.646
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8.52900.1 M Tris-HCl, pH 8.5, 0.2 M NaCl, 20% glycerol and 13-18% PEG 3350

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