Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8DB7

Adenosine/guanosine nucleoside hydrolase bound to a fragment inhibitor

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS-II BEAMLINE 17-ID-1
Synchrotron siteNSLS-II
Beamline17-ID-1
Temperature [K]100
Detector technologyPIXEL
Collection date2021-11-22
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.987
Spacegroup nameP 1
Unit cell lengths50.651, 74.537, 85.641
Unit cell angles83.02, 80.90, 89.90
Refinement procedure
Resolution29.990 - 2.330
R-factor0.1979
Rwork0.196
R-free0.25580
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)AlphaFold model
RMSD bond length0.009
RMSD bond angle1.058
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]29.9902.413
High resolution limit [Å]2.3302.330
Rmerge0.1750.710
Rmeas0.1900.775
Rpim0.0730.304
Number of reflections514895011
<I/σ(I)>8.61.7
Completeness [%]98.295.26
Redundancy6.85.9
CC(1/2)0.9920.839
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2900.2 M ammonium sulfate, 25% PEG-3350, and 0.1 M Bis-tris, pH 5.5

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon