8DB7
Adenosine/guanosine nucleoside hydrolase bound to a fragment inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-22 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.987 |
Spacegroup name | P 1 |
Unit cell lengths | 50.651, 74.537, 85.641 |
Unit cell angles | 83.02, 80.90, 89.90 |
Refinement procedure
Resolution | 29.990 - 2.330 |
R-factor | 0.1979 |
Rwork | 0.196 |
R-free | 0.25580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | AlphaFold model |
RMSD bond length | 0.009 |
RMSD bond angle | 1.058 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.990 | 2.413 |
High resolution limit [Å] | 2.330 | 2.330 |
Rmerge | 0.175 | 0.710 |
Rmeas | 0.190 | 0.775 |
Rpim | 0.073 | 0.304 |
Number of reflections | 51489 | 5011 |
<I/σ(I)> | 8.6 | 1.7 |
Completeness [%] | 98.2 | 95.26 |
Redundancy | 6.8 | 5.9 |
CC(1/2) | 0.992 | 0.839 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 290 | 0.2 M ammonium sulfate, 25% PEG-3350, and 0.1 M Bis-tris, pH 5.5 |